{ "cells": [ { "cell_type": "markdown", "id": "dbc868c1", "metadata": { "papermill": { "duration": 0.00709, "end_time": "2024-07-01T13:29:09.430466", "exception": false, "start_time": "2024-07-01T13:29:09.423376", "status": "completed" }, "tags": [] }, "source": [ "# Metadata table" ] }, { "cell_type": "code", "execution_count": 1, "id": "6998a0a4", "metadata": { "execution": { "iopub.execute_input": "2024-07-01T13:29:09.445222Z", "iopub.status.busy": "2024-07-01T13:29:09.444883Z", "iopub.status.idle": "2024-07-01T13:29:09.456568Z", "shell.execute_reply": "2024-07-01T13:29:09.455843Z" }, "papermill": { "duration": 0.021077, "end_time": "2024-07-01T13:29:09.458566", "exception": false, "start_time": "2024-07-01T13:29:09.437489", "status": "completed" }, "tags": [ "remove-input" ] }, "outputs": [], "source": [ "# NO CODE\n", "from json2html import json2html\n", "import json, re\n", "from IPython.display import HTML" ] }, { "cell_type": "code", "execution_count": 2, "id": "eebab20d", "metadata": { "execution": { "iopub.execute_input": "2024-07-01T13:29:09.471441Z", "iopub.status.busy": "2024-07-01T13:29:09.471148Z", "iopub.status.idle": "2024-07-01T13:29:09.477141Z", "shell.execute_reply": "2024-07-01T13:29:09.476066Z" }, "papermill": { "duration": 0.015066, "end_time": "2024-07-01T13:29:09.479663", "exception": false, "start_time": "2024-07-01T13:29:09.464597", "status": "completed" }, "tags": [ "parameters", "remove-input" ] }, "outputs": [], "source": [ "# NO CODE\n", "# PARAMETERS\n", "path = './meta/environment/meteocat_xema'" ] }, { "cell_type": "code", "execution_count": 3, "id": "fe2b55c0", "metadata": { "execution": { "iopub.execute_input": "2024-07-01T13:29:09.494057Z", "iopub.status.busy": "2024-07-01T13:29:09.493499Z", "iopub.status.idle": "2024-07-01T13:29:09.499023Z", "shell.execute_reply": "2024-07-01T13:29:09.497838Z" }, "papermill": { "duration": 0.015515, "end_time": "2024-07-01T13:29:09.501475", "exception": false, "start_time": "2024-07-01T13:29:09.485960", "status": "completed" }, "tags": [ "injected-parameters" ] }, "outputs": [], "source": [ "# Parameters\n", "path = \"./meta/mosquito_alert/photos_clean\"\n" ] }, { "cell_type": "code", "execution_count": 4, "id": "98ecd747", "metadata": { "execution": { "iopub.execute_input": "2024-07-01T13:29:09.518264Z", "iopub.status.busy": "2024-07-01T13:29:09.517646Z", "iopub.status.idle": "2024-07-01T13:29:09.545476Z", "shell.execute_reply": "2024-07-01T13:29:09.544631Z" }, "papermill": { "duration": 0.039176, "end_time": "2024-07-01T13:29:09.547331", "exception": false, "start_time": "2024-07-01T13:29:09.508155", "status": "completed" }, "tags": [ "remove-input", "full-width" ] }, "outputs": [ { "data": { "text/html": [ "
$schema../schema.json
@context
@vocabhttps://schema.org/
qudthttp://qudt.org/schema/qudt/
xsdhttp://www.w3.org/2001/XMLSchema#
@typeDataset
namephotos_clean
conditionsOfAccessPublic
descriptionIdentifier references to Mosquito Alert report pictures that appear on the public Mosquito Alert webmap. This is a public version of the analytic_tables/tigaserver_app_photo dataset.
licensehttps://creativecommons.org/publicdomain/zero/1.0/
citation
  • Palmer, J. R. B., “Citizen science provides a reliable and scalable tool to track disease-carrying mosquitoes”, Nature Communications, vol. 8, 2017. doi:10.1038/s41467-017-00914-9
temporalCoverage2014/..
spatialCoverage
@typePlace
nameWorldwide
sameAshttps://www.wikidata.org/wiki/Q13780930
distribution
  • @typeDataDownload
    namemosquitoalert_webserver
    descriptionDistribution download from MosquitoAlert webserver
    encodingFormatCSV
    workExample./notebooks/photos_clean.py
    contentUrl
    • http://webserver.mosquitoalert.com/static/earlyImageService/mosquito_alert_photos_clean.csv
    contentSize+9MB
variableMeasured
  • @typePropertyValue
    nameid
    descriptionUnique ID assigned to the photo when it was uploaded to the Mosquito Alert server.
    unitText
    qudt:dataTypexsd:int
  • @typePropertyValue
    namephoto
    descriptionPath to photo on the Mosquito Alert server.
    unitText
    qudt:dataTypexsd:string
  • @typePropertyValue
    namereport_id
    descriptionUUID of the report in which this photo was uploaded.
    unitText
    qudt:dataTypexsd:string
  • @typePropertyValue
    namehide
    descriptionIndicator of whether this photo is hidden on the server. Only visible photos are included in this data set, so this variable is already FALSE (and can be ignored).
    unitText
    qudt:dataTypexsd:boolean
  • @typePropertyValue
    nameuuid
    descriptionUUID assigned to this photo by the app before it was sent to the Mosquito Alert server.
    unitText
    qudt:dataTypexsd:string
measurementTechnique
  • Sampling. Anonymous citizen scientists send reports of possible observations of mosquitoes, their breeding sites and bites using the open source and free smartphone app Mosquito Alert. To send an observation, participants need to answer a small questionnaire (taxonomic questions in the case of mosquitoes or some descriptors in the case of breeding sites), indicate the location (current participant location or selecting it on a map), add a picture (optional) and notes or comments (optional). The app and project website offers information to help identify the target species and take good pictures that allow a proper post validation from entomologists (see more information onQuality Control section). Participants can edit or remove the observation at any time (only if the participant still maintains the Mosquito Alert app in their phone). The last version of each report is considered the prevailing information. There is no pre-set sampling frequency: participants can send as many data as they like. The project runs "face-to-face data collection events" mainly in schools, meaning that in some places and for a given time period, data sampling might be more intense. This is also true when and where there has been a particular dissemination event.
creator
  • @typeProject
    @idMA
    nameMosquito Alert, Proyecto Coordinado por CREAF, CEAB-CSIC e ICREA
    contactPoint
    @typeContactPoint
    emailinfo@mosquitoalert.com
    urlhttp://www.mosquitoalert.com/
  • @typePerson
    @idJP
    namePalmer, John Rossman Bertholf
    identifierhttps://orcid.org/0000-0002-2648-7860
    contactPoint
    @typeContactPoint
    contactTypeprincipal investigator
    emailjohn.palmer@upf.edu
    urlhttps://www.upf.edu/web/gritim/entry/-/-/50722/adscripcion/john-rossman-bertholf-palmer/
  • @typePerson
    @idAE
    nameEscobar Rúbies, Agustí
    identifierhttps://orcid.org/0000-0002-6856-0480
    contactPoint
    @typeContactPoint
    contactTypeprogrammer
    emaila.escobar@creaf.uab.es
    urlhttp://www.creaf.cat/es/personal/agusti-escobar-rubies/
" ], "text/plain": [ "" ] }, "execution_count": 4, "metadata": {}, "output_type": "execute_result" } ], "source": [ "# NO CODE\n", "# FULL WIDTH\n", "with open(f'{path}.json') as f:\n", " data = json.load(f)\n", "\n", "table = json2html.convert(json=data, clubbing=False)\n", "table_sub = re.sub('', '', table)\n", "\n", "HTML(table_sub)\n", "\n", "# Run the following in the command line to build a html table\n", "# $ jupyter nbconvert --to html --no-input --no-prompt build_tables.ipynb\n" ] }, { "cell_type": "code", "execution_count": null, "id": "b04e9abc", "metadata": { "papermill": { "duration": 0.007153, "end_time": "2024-07-01T13:29:09.561675", "exception": false, "start_time": "2024-07-01T13:29:09.554522", "status": "completed" }, "tags": [] }, "outputs": [], "source": [] } ], "metadata": { "interpreter": { "hash": "524d3359b179f3b444361f48db8ae048bd8c237924fac1cd48a4c6f8144f6452" }, "kernelspec": { "display_name": "Python 3.7.10 64-bit ('scidb': conda)", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.10.4" }, "metadata": { "interpreter": { "hash": "e3961729dbf4ff77740ff872c9a3eef08621b5b434e3d8d81026af4505918c74" } }, "papermill": { "default_parameters": {}, "duration": 1.621, "end_time": "2024-07-01T13:29:09.793548", "environment_variables": {}, "exception": null, "input_path": "build_info.ipynb", "output_path": "./meta_ipynb/photos_clean.ipynb", "parameters": { "path": "./meta/mosquito_alert/photos_clean" }, "start_time": "2024-07-01T13:29:08.172548", "version": "2.3.4" } }, "nbformat": 4, "nbformat_minor": 5 }